Identification and Functional Prediction of lncRNAs using Bioinformatic Techniques


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Shizuka Uchida

Center for RNA Medicine, Department of Clinical Medicine, Aalborg University

Autor responsável pela correspondência
Email: info@benthamscience.net

Bibliografia

  1. Mattick, J. S.; Amaral, P. P.; Carninci, P.; Carpenter, S.; Chang, H. Y.; Chen, L.-L.; Chen, R.; Dean, C.; Dinger, M. E.; Fitzgerald, K. A.; Gingeras, T. R.; Guttman, M.; Hirose, T.; Huarte, M.; Johnson, R.; Kanduri, C.; Kapranov, P.; Lawrence, J. B.; Lee, J. T.; Mendell, J. T.; Mercer, T. R.; Moore, K. J.; Nakagawa, S.; Rinn, J. L.; Spector, D. L.; Ulitsky, I.; Wan, Y.; Wilusz, J. E.; Wu, M. Long Non-Coding RNAs: Definitions, Functions, Challenges and Recommendations. Nat Rev Mol Cell Biol, 2023, 24(6), 430-447. doi: 10.1038/s41580-022-00566-8
  2. Ilieva, M.; Uchida, S. Perspectives of LncRNAs for Therapy. Cell Biol Toxicol, 2022, 38(6), 915-917. doi: 10.1007/s10565-022-09779-1
  3. Distefano, R.; Ilieva, M.; Rennie, S.; Uchida, S. Recommendations for Bioinformatic Tools in LncRNA Research. CBIO, 2023, 18. doi: 10.2174/1574893618666230707103956
  4. Aznaourova, M.; Janga, H.; Sefried, S.; Kaufmann, A.; Dorna, J.; Volkers, S. M.; Georg, P.; Lechner, M.; Hoppe, J.; Dökel, S.; Schmerer, N.; Gruber, A. D.; Linne, U.; Bauer, S.; Sander, L. E.; Schmeck, B.; Schulte, L. N. Noncoding RNA MaIL1 Is an Integral Component of the TLR4–TRIF Pathway. Proc. Natl. Acad. Sci. U.S.A., 2020, 117(16), 9042-9053. doi: 10.1073/pnas.1920393117
  5. Chakraborty, C.; Bhattacharya, M.; Ranjan Sharma, A. MiRNA, SiRNA, and LncRNAs: Recent Development of Bioinformatics Tools and Databases in Support of Combating Different Diseases. CBIO, 2023, 18. doi: 10.2174/1574893618666230411104945
  6. Jha, P.; Barbeiro, M.; Lupieri, A.; Aikawa, E.; Uchida, S.; Aikawa, M. Computational Methods for Functional Characterization of LncRNAs in Human Diseases: A Focus on Co-Expression Networks. CBIO, 2023, 18. doi: 10.2174/1574893618666230727103257
  7. Tang, X.; Ren, H.; Guo, M.; Qian, J.; Yang, Y.; Gu, C. Review on Circular RNAs and New Insights into Their Roles in Cancer. Computational and Structural Biotechnology Journal, 2021, 19, 910-928. doi: 10.1016/j.csbj.2021.01.018
  8. Wang, Z.; Zhang, S.; Xiao, Y.; Zhang, W.; Wu, S.; Qin, T.; Yue, Y.; Qian, W.; Li, L. NLRP3 Inflammasome and Inflammatory Diseases. Oxidative Medicine and Cellular Longevity, 2020, 2020, 1-11. doi: 10.1155/2020/4063562
  9. Hwang, J. Y.; Kook, T. L.; Paulus, S. M.; Park, J. W. Translation of Circular RNAs: Functions of Translated Products and Related Bioinformatics Approaches. CBIO, 2023, 18. doi: 10.2174/1574893618666230505101059

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